PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076178.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 331aa    MW: 36828.3 Da    PI: 7.3124
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH50.14.4e-16246271126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tGtC+yGd+C+FaHg
  XP_011076178.1 246 FKTELCNKWQQTGTCPYGDNCQFAHG 271
                     79***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-20240278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-12242277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.244245273IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-10245272IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-13246271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-11279312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-7282313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46283311IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4283310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MQREFSISGR EKPTVSAASP PYTGGYDFAA SLYPSIFPPM HSPLLDYLND GVSPSRESDD  60
VSTSCLPQIQ QQHLHQDLMD RHQRVLSNLR DVANQAQALR HENVNLKMAN LDLNNRLNML  120
LNAAPCHGVD LVPGFNSVVD GLRNMGFGTE EEGTSENEAV VKSPTSVMDP GRGDSGELDR  180
VHLPKSISIR SSGYLKAVRA GGSSRKGGDC GKASNQTRID NGTQRVYVNG GKKEQIELEV  240
YNQGMFKTEL CNKWQQTGTC PYGDNCQFAH GIEELRPVLR HPRYKTEICR MVLNGVPCPY  300
GHRCHFRHTL TDQEQLTRAM NSNALQPLDY R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-22246308466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076187.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
RefseqXP_011076178.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
RefseqXP_011076170.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F59e-70C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A022RLC21e-163A0A022RLC2_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000785229e-97(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-64C3H family protein